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中国临床药理学与治疗学 ›› 2024, Vol. 29 ›› Issue (10): 1120-1133.doi: 10.12092/j.issn.1009-2501.2024.10.005

• 基础研究 • 上一篇    下一篇

基于网络药理学与实验验证研究荜茇抗肺纤维化的作用机制

郭晶晶1,甄华2,张胜巍3,菅若男2   

  1. 1内蒙古科技大学包头医学院药学院,包头  014040,内蒙古;2呼和浩特市第一医院药剂科,呼和浩特  010000,内蒙古;3包头医学院第一附属医院,包头 014040,内蒙古
  • 收稿日期:2023-10-09 修回日期:2023-11-23 出版日期:2024-10-26 发布日期:2024-09-29
  • 通讯作者: 菅若男,女,硕士,主管药师,研究方向:中药药理学。 E-mail:ruonanjian@163.com
  • 作者简介:郭晶晶 ,女,硕士,讲师,研究方向:临床疗效的民族创新药物与药理学研究。 E-mail:15147129656@163.com
  • 基金资助:
    内蒙古自治区首府地区公立医院高水平临床专科建设科技项目(2024SGGZ137);内蒙古高等教育厅基金项目(NJZY23091);包头市青年创新人才项目(202229);内蒙古自治区自然科学基金项目(2023QN08049);包头医学院科学研究基金项目-青苗计划(BYJJ-ZRQM 202304);包头医学院科学研究基金项目(BYJJ-KCRH 202418)

Effect of Piperlongum L against pulmonary fibrosis based on network pharmacology and in vitro studies

GUO Jingjing1, ZHEN Hua2, ZHANG Shengwei3, JIAN Ruonan2   

  1. 1 Baotou Medical College, Baotou 014040, Neimenggu, China; 2 The First Hospital of Hohhot, Hohhot 010000, Neimenggu, China; 3 The First Affiliated Hospital of Baotou Medical College, Baotou 014040,Neimenggu, China
  • Received:2023-10-09 Revised:2023-11-23 Online:2024-10-26 Published:2024-09-29

摘要:

目的:通过网络药理学及分子对接技术初步预测荜茇抗肺纤维化的活性成分、作用靶点及信号通路,并通过体外实验进行初步验证荜茇抗肺纤维化的作用机制。方法:从TCMSP、Swiss Target Prediction和 PubChem等数据库中获取药物的有效成分及对应靶点。使用 GeneCards 和OMIM数据库收集疾病的相关靶点。利用jvenn在线工具筛选出药物与疾病的交集靶点,通过 String 数据库及 Cytoscape 3.9.1 软件构建“药物-成分-靶点”与 PPI 网络图。使用微生信平台对交集靶点进行 GO 及 KEGG 富集分析,将富集KEGG前20条通路、核心靶点、药物成分,构建“成分-靶点-通路”网络并进行可视化。利用分子对接技术将药物成分与靶点进行对接,并对其部分对接结果可视化。培养HFL-1细胞,采用MTT法检测各浓度对细胞活力的影响,计算抑制率,从而筛选出最佳的药物浓度。将体外培养的HFL-1细胞分为4组,即对照组、TGF-β1组、TGF-β1+LD组(联合LD组)、TGF-β1+HD组(联合HD组)。采用CCK-8试剂检测24、48、72 h的细胞增殖活性。采用平板克隆形成实验来观察药物对HFL-1细胞克隆形成能力的影响。采用RT-qPCR和Western blot实验观察各组细胞α-平滑肌肌动蛋白(α-SMA)、I型胶原蛋白(COI-I)、Ⅲ型胶原蛋白(COI-Ⅲ)的mRNA 和PI3K-Akt信号通路蛋白表达水平。结果:共获得荜茇与抗肺纤维化交集靶点为197个。经拓扑学分析获得核心PPI网络,包含 29个节点与199条边;GO功能分析显示,荜茇治疗肺纤维化(PF)生物学过程包括:凋亡过程负调控、信号转导、蛋白质磷酸化等。细胞成分包括:细胞质、核浆、等离子体膜。分子功能包括相同的蛋白结合、丝氨酸/苏氨酸/酪氨酸激酶活性、蛋白结合等。KEGG信号通路被155条富集,而其中已被证实,与PF密切相关为PI3K-Akt信号通路,富集排名第四。“成分-靶点-通路”网络中PIK3CA、MAPK3、MAPK1、MTOR、SRC、CCND1、EGFR、PRKCA、BCL2、GSK3B链接度最高。荜茇宁、N-(2,5-二甲氧基苯基)-4-甲氧基苯甲酰胺、四氢丹参酮、豌豆素和胡椒碱是关键化合物。分子对接结果显示,除N-(2,5-二甲氧基苯基)-4-甲氧基苯甲酰胺外,其余化合物与10个链接度高的蛋白质结合活性较好。体外实验显示, 48、72 h联合LD组增殖能力明显低于TGF-β1组(P<0.05),24、48、72 h联合HD组又显著低于联合LD组。各药物组克隆数量显著减少(P<0.05)。联合LD和联合HD组α-SMA、COl-I、COl-Ⅲ mRNA和蛋白表达水平明显低于TGF-β1组。与TGF-β1组相比,两个剂量组中p-PI3K/PI3K、p-AKT/AKT蛋白表达显著减少(P<0.01)。结论:荜茇抗PF作用,其机制可能通过调控PI3K-Akt信号通路而发挥治疗PF作用。

关键词: 荜茇, 肺纤维化, 网络药理学, 分子对接, HFL-1细胞, PI3K-Akt信号通路

Abstract:

AIM: To predict the active components and targets of Piperlongum L. and the associated signaling pathways involved in pulmonary fibrosis using network pharmacology and molecular docking technique and evaluate the mechanism of Piperlongum L against pulmonary fibrosis by in vitro experiments. METHODS: The active ingredients and targets were retrieved from TCMSP, Swiss Target Prediction and PubChem databases. The disease-related targets were retrieved from GeneCards and OMIM databases. The intersection targets of the drugs and disease-related targets were identified using jvenn online tool. String database was used to construct the "drug-component-target" and PPI network and the networks were visualized using Cytoscape 3.9.1 software. GO and KEGG enrichment analysis were performed on the intersection targets using the DAVID tool. The top 20 KEGG pathways, core targets and drug components were used to construct a "component-target-pathway" network and the network visualization was performed using Cytoscape 3.9.1 software. The interactions between drug compounds and the targets were evaluated by molecular docking, and the docking results were visualized using Discovery studio. HFL-1 cells were cultured and the effect of the drug compounds on cell viability was determined by MTT assay. The inhibition rate was then calculated to determine the optimal drug concentration. HFL-1 cells were cultured in vitro and were assigned into 4 groups: control group, TGF-β1 group, TGF-β1+LD group (LD group), TGF-β1+HD group (HD group). CCK-8 kit was used to evaluate the antiproliferative activity of the drug compounds against HFL-1 cells at 24, 48 and 72 h. Plate clone formation assay was performed to evaluate the effect of drugs on the colony formation ability of HFL-1 cells. RT-qPCR and western blot were conducted to determine the effect of the compounds on the mRNA and protein expression levels of α-smooth muscle actin (α-SMA), collagen type I (COI-I), and collagen type III (COI-III) in each group. RESULTS: A total of 197 intersection targets of Piperlongum L and anti-pulmonary fibrosis were identified. The core PPI network comprised 29 nodes (targets) and 199 edges (interactions). GO functional analysis showed that the significantly enriched biological processes associated with the compounds in Piperlongum L included negative regulation of apoptosis, signal transduction, and protein phosphorylation. Significantly enriched cellular components included cytoplasm, nuclear cytoplasm, plasma membrane. Enriched molecular functions associated with the compounds included the same protein binding, serine/threonine/tyrosine kinase activity, and protein binding. A total of 155 significantly enriched KEGG signaling pathways were identified, with PI3K-Akt signaling pathway was highly associated with PF and was the fourth most enriched pathway. PIK3CA, MAPK3, MAPK1, MTOR, SRC, CCND1, EGFR, PRKCA, BCL2, and GSK3B had the highest connectivity in the components-target-pathway network. Piperlongine, N-(2, 5-dimethoxyphenyl) -4-methoxybenzamide, tetrahydrotanshinone, pisigenin and piperine were the key compounds in Piperlongum L. The molecular docking results showed that all the compounds except N-(2,5-dimethoxyphenyl)-4-methoxybenzamide had good binding activities with interactions observed with 10 proteins. The proliferation ability of the cells in the LD group was significantly lower than that of the TGF-β1 group at 48 h and 72 h (P<0.05). The proliferation ability of cells HD group was significantly lower than the LD group at 24, 48 and 72 h. The number of clones in each drug group was significantly reduced after treatment with the drugs (P<0.05). The mRNA and protein expression levels of α-SMA, COI-I, COI-III in LD and HD groups were significantly lower than the expression levels in the TGF-β1 group. The protein expression levels of p-PI3K/PI3K and p-Akt /AKT were significantly lower in the two dose groups compared with the TGF-β1 group (P<0.01). CONCLUSION: The results showed that the effect of Piperlongum L against PF is probably through modulation of the PI3K-Akt signaling pathway.

Key words: Piperlongum L., pulmonary fibrosis, network pharmacology, molecular docking technology, HFL-1 cell, PI3K-Akt signaling pathway

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