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Chinese Journal of Clinical Pharmacology and Therapeutics ›› 2002, Vol. 7 ›› Issue (2): 100-105.

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Comparison of CYP2D6 genotyping by allele-specific PCR with DXT phe-notype and gene chip testing1

YAN Feng-Xiang, LIAO Duan-Fang, CHOU Wen-Hwei2, WEDLUND Peter-J2, ROBBINS-WEILERT Dor-ris-K3, RYDER Thomas-B4, LIU Wei-Wei4, PERBOST Clotilde5, FAIRCHILD Maureen5, KOCH Walter-H5   

  1. Institute of Pharmacy and Pharmacology, Nanhua University, Hengyang 421001;
    2College of Pharmacy, University of Kentucky, Lexington, KY;
    3Quintiles, Inc, Kansas, MO;
    4Affymetrix, Santa Clara, CA;
    5Roche Molecular,Inc,Alameda, CA
  • Received:2002-01-23 Accepted:2002-02-25 Online:2002-04-26 Published:2020-11-27
  • Contact: YAN Feng-Xiang, male, master, associate professor,engaged in clinical and cardiovascular pharmacology, visiting scholar in USA in 1997-2001.Tel:0734-8281239   E-mail:yanfx61@yahoo.com
  • About author:LIAO Duan-Fang, male, PhD, professor, mentor of PhD, engaged in phar-macological research, vice-president of Nanhua University.
  • Supported by:
    1 Project supported partially by the National Natural Science Foundation of China, No30171084.

Abstract: AIM: To evaluate association of genotype and phenotype of CYP2D6 and the application of oligonu-cleotide microarray hybridization genetic testing in CYP2D6 multiple alleles analyses.METHODS: Two hundred forty-two healthy volunteers were recruited, and a 60 mg oral dose of dextromethorphan (DXT) was ad-ministered to each for assessment of the DXT metabolic ratio [MR].A 20 ml blood sample was also collected for DNA isolation and testing.CYP2D6 alleles *2——— * 11;*17 and multiple CYP2D6 gene copies were tested by allele-specific PCRand/or the affymetrix CYP450 gene chip assay.Five of the CYP2D6 alleles (*3, *4, * 6, *7, and *9) were evaluated by both PCR and the CYP450 gene chip assay.RESULTS: The CYP2D6 genotype was more informative and reflective in CYP2D6 enzyme expression than a phenotype.Genetic tests for the CYP2D6 *3, *4, *6, *7 and *9 alleles showed a high degree of concordance between the CYP450 gene chip and AS-PCR methods.CONCLUSION: Oligonu-cleotide microarray hybridization is a promising and reli-able approach for detecting multiple alleles at gene loci.

Key words: CYP2D6, phenotype, genotype, PCR, oligonucleotide microarray hybridization

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